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map2gtf

By Trapnell C., Salzberg S. , Last update 1494698999
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map2gtf description

Map2gtf converts the transcriptomic coordinate bam file to genomic coordinate bam


Parent program: tophat

TopHat is a fast tool for splice junction mapping for RNA-Seq reads. It aligns reads to genome using the high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. It can work without a reference annotation and process mammalian-sized genomes.