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gomo_highlight

By Bailey T., Elkan C., Last update 1494698999
All tools Run in Terminal

gomo_highlight description

Gomo_highlight updates the GOMO XML file(s) to add details about the GO terms, such as their name, hierarchy, relative position in that hierarchy and which are implied by others in the significant terms for each motif. This allows many improvements to be made in the human readable html output such as allowing the most specific terms to be highlighted. The same postprocessing can be achieved by using the --dag option to gomo.


Parent program: meme

MEME is a tool for discovering motifs in a group of related DNA or protein sequences. MEME takes as input a group of DNA or protein sequences and outputs as many motifs as requested up to a user-specified statistical confidence threshold. MEME uses statistical modeling techniques to automatically choose the best width, number of occurrences, and description for each motif.