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geneCoverage2fasta

By Kostikova A., Last update 1494698999
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geneCoverage2fasta description

geneCoverage2fasta tool provide a simple way to blast NCBI database for sequences given a list of reference sequences and taxon range. Unlike web based BLAST interface, this tool filters out replicated species keeping only the longest sequence for each unique species. Also, it automatically renames all the species into format easily managable by most multiple sequenced alignment tools (mafft, clustal, muscle, t-coffee, etc) and phylogeny reconstruction programs and presents output in various convinient forms (fasta, txt, xml, gb). This tool is very useful when one would like to reconstruct a large phylogeny and need to parse NCBI database for multiple species (genus, families, orders).


Parent program: geneCoverage2fasta

geneCoverage2fasta tool provide a simple way to blast NCBI database for sequences given a list of reference sequences and taxon range. Unlike web based BLAST interface, this tool filters out replicated species keeping only the longest sequence for each unique species. Also, it automatically renames all the species into format easily managable by most multiple sequenced alignment tools (mafft, clustal, muscle, t-coffee, etc) and phylogeny reconstruction programs and presents output in various convinient forms (fasta, txt, xml, gb). This tool is very useful when one would like to reconstruct a large phylogeny and need to parse NCBI database for multiple species (genus, families, orders).