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fastx_barcode_splitter

By Gordon A., Hannon G., Last update 1494698999
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fastx_barcode_splitter description

Fastx_barcode_splitter splits fasta or fastq files into several smaller files based on barcode matching. Barcodes can be searched either at the beginning of sequences (5* end - option --bol) or at the end of sequences (3* end - option --eol). This tool can work both with fasta or fastq files


Parent program: fastx_toolkit

FASTX-Toolkit is a software package for preprocessing output data produced by Next-Generation sequencing machines in FASTA and FASTQ format before the main processing (assembling, mapping etc.). FASTQ to FASTA conversion, statistics calculation, file customization, quality-based preprocessing, trimming and etc. can be provided.