838 citations
2 runs

abyss-gc

By Jackman S., Birol I., Last update 1494698999
All tools Run this tool

abyss-gc description

Abyss-gc count the number of vertices and edges in a graph


Parent program: abyss

ABySS is a de novo sequencing assembler developed for short reads of large genomes. It has novel scaffolding algorithm capable of assembling very large genomes including human genomes (>3.5 billion paired-end reads). ABySS algorithm eliminates ambiguities in the scaffold graph and identifies contigs that are assembled into scaffolds.The assembly runs in three stages: assemble contigs without paired-end information, align the paired-end reads to the initial assembly, and merge contigs joined by paired-end information.