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SOAPdenovo-63mer

By Luo R., Last update 1494698999
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SOAPdenovo-63mer description

SOAPdenovo (up to 63kmer size) allows to assemble short reads sequences into large scaffolds or genomes. SOAPdenovo can handle data for large plant and animal genomes, although it also works well on bacteria and fungi genomes. SOAPdenovo has six modules that handle read error correction, de Bruijn graph construction, contig assembly, paired-end reads mapping, scaffold construction, and gap closure. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes.


Parent program: SOAPdenovo

SOAPdenovo allows to assemble short reads sequences into large scaffolds or genomes. SOAPdenovo can handle data for large plant and animal genomes, although it also works well on bacteria and fungi genomes. SOAPdenovo has six modules that handle read error correction, de Bruijn graph construction, contig assembly, paired-end reads mapping, scaffold construction, and gap closure. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes.