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Msa2prfl

By Stanke M., Keller O., Morgenstern B., Last update 1494698999
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Msa2prfl description

Msa2prfl.pl converts a Multiple Sequence Alignment in FASTA or CLUSTAL format into a protein block profile that can be used as input for AUGUSTUS-PPX. Uses a BLOSUM q_ij matrix to calculate pseudocounts.


Parent program: augustus

Msa2prfl.pl converts a Multiple Sequence Alignment in FASTA or CLUSTAL format into a protein block profile that can be used as input for AUGUSTUS-PPX. Uses a BLOSUM q_ij matrix to calculate pseudocounts.