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CollectInsertSizeMetrics

By Broad Institute, Last update 1494699000
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CollectInsertSizeMetrics description

CollectInsertSizeMetrics reads a SAM or BAM file and writes a file containing metrics about the statistical distribution of insert size (excluding duplicates) and generates a Histogram plot.


Parent program: PICARD

Picard is a set of utilities that manipulate SAM files, and a Java API (HTSJDK) for creating new programs that read and write SAM files. Both SAM text format and SAM binary (BAM) format are supported.